AffiliationSchool of Biology and Environmental Science, University College Dublin, BioSciences Institute, University College Cork, Ireland.
Information Storage and Retrieval
Molecular Sequence Data
MetadataShow full item record
CitationRecode-2: new design, new search tools, and many more genes. 2010, 38 (Database issue):D69-74 Nucleic Acids Res.
JournalNucleic acids research
Abstract'Recoding' is a term used to describe non-standard read-out of the genetic code, and encompasses such phenomena as programmed ribosomal frameshifting, stop codon readthrough, selenocysteine insertion and translational bypassing. Although only a small proportion of genes utilize recoding in protein synthesis, accurate annotation of 'recoded' genes lags far behind annotation of 'standard' genes. In order to address this issue, provide a service to researchers in the field, and offer training data for developers of gene-annotation software, we have gathered together known cases of recoding within the Recode database. Recode-2 is an improved and updated version of the database. It provides access to detailed information on genes known to utilize translational recoding and allows complex search queries, browsing of recoding data and enhanced visualization of annotated sequence elements. At present, the Recode-2 database stores information on approximately 1500 genes that are known to utilize recoding in their expression--a factor of approximately three increase over the previous version of the database. Recode-2 is available at http://recode.ucc.ie.
- RECODE 2003.
- Authors: Baranov PV, Gurvich OL, Hammer AW, Gesteland RF, Atkins JF
- Issue date: 2003 Jan 1
- RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.
- Authors: Baranov PV, Gurvich OL, Fayet O, Prère MF, Miller WA, Gesteland RF, Atkins JF, Giddings MC
- Issue date: 2001 Jan 1
- Recoding in archaea.
- Authors: Cobucci-Ponzano B, Rossi M, Moracci M
- Issue date: 2005 Jan
- ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting.
- Authors: Bekaert M, Atkins JF, Baranov PV
- Issue date: 2006 Oct 15
- Translational recoding: canonical translation mechanisms reinterpreted.
- Authors: Rodnina MV, Korniy N, Klimova M, Karki P, Peng BZ, Senyushkina T, Belardinelli R, Maracci C, Wohlgemuth I, Samatova E, Peske F
- Issue date: 2020 Feb 20