AffiliationSmurfit Institute of Genetics, University of Dublin, Trinity College, Dublin 2, Ireland.
Comparative Genomic Hybridization
Protein Interaction Mapping
Sequence Analysis, DNA
MetadataShow full item record
CitationDuplicability of self-interacting human genes. 2010, 10:160 BMC Evol. Biol.
JournalBMC evolutionary biology
AbstractBACKGROUND: There is increasing interest in the evolution of protein-protein interactions because this should ultimately be informative of the patterns of evolution of new protein functions within the cell. One model proposes that the evolution of new protein-protein interactions and protein complexes proceeds through the duplication of self-interacting genes. This model is supported by data from yeast. We examined the relationship between gene duplication and self-interaction in the human genome. RESULTS: We investigated the patterns of self-interaction and duplication among 34808 interactions encoded by 8881 human genes, and show that self-interacting proteins are encoded by genes with higher duplicability than genes whose proteins lack this type of interaction. We show that this result is robust against the system used to define duplicate genes. Finally we compared the presence of self-interactions amongst proteins whose genes have duplicated either through whole-genome duplication (WGD) or small-scale duplication (SSD), and show that the former tend to have more interactions in general. After controlling for age differences between the two sets of duplicates this result can be explained by the time since the gene duplication. CONCLUSIONS: Genes encoding self-interacting proteins tend to have higher duplicability than proteins lacking self-interactions. Moreover these duplicate genes have more often arisen through whole-genome rather than small-scale duplication. Finally, self-interacting WGD genes tend to have more interaction partners in general in the PIN, which can be explained by their overall greater age. This work adds to our growing knowledge of the importance of contextual factors in gene duplicability.
CollectionsJournal articles & published research
- Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network.
- Authors: Doherty A, Alvarez-Ponce D, McInerney JO
- Issue date: 2012 Nov
- Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network.
- Authors: Alvarez-Ponce D, Fares MA
- Issue date: 2012
- Intrinsic protein disorder reduces small-scale gene duplicability.
- Authors: Banerjee S, Feyertag F, Alvarez-Ponce D
- Issue date: 2017 Aug 1
- Evolutionary dynamics and functional specialization of plant paralogs formed by whole and small-scale genome duplications.
- Authors: Carretero-Paulet L, Fares MA
- Issue date: 2012 Nov
- Protein connectivity and protein complexity promotes human gene duplicability in a mutually exclusive manner.
- Authors: Bhattacharya T, Ghosh TC
- Issue date: 2010 Oct