Development of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland.

Hdl Handle:
http://hdl.handle.net/10147/95628
Title:
Development of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland.
Authors:
Menton, John F; Kearney, Karen; Morgan, John G
Affiliation:
Lab 439, Food Science Building, Department of Microbiology, University College Cork, Cork, Republic of Ireland. j.menton@ucc.ie
Citation:
Development of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland. 2007, 4:86 Virol. J.
Journal:
Virology journal
Issue Date:
2007
URI:
http://hdl.handle.net/10147/95628
DOI:
10.1186/1743-422X-4-86
PubMed ID:
17822552
Abstract:
BACKGROUND: Noroviruses are the most common cause of non-bacterial gastroenteritis. Improved detection methods have seen a large increase in the number of human NoV genotypes in the last ten years. The objective of this study was to develop a fast method to detect, quantify and genotype positive NoV samples from Irish hospitals. RESULTS: A real-time RT-PCR assay and a Reverse Line Blot Hybridisation assay were developed based on the ORF1-ORF2 region. The sensitivity and reactivity of the two assays used was validated using a reference stool panel containing 14 NoV genotypes. The assays were then used to investigate two outbreaks of gastroenteritis in two Irish hospitals. 56 samples were screened for NoV using a real-time RT-PCR assay and 26 samples were found to be positive. Genotyping of these positive samples found that all positives belonged to the GII/4 variant of NoV. CONCLUSION: The combination of the Real-time assay and the reverse line blot hybridisation assay provided a fast and accurate method to investigate a NoV associated outbreak. It was concluded that the predominant genotype circulating in these Irish hospitals was GII/4 which has been associated with the majority of NoV outbreaks worldwide. The assays developed in this study are useful tools for investigating NoV infection.
Language:
en
MeSH:
Caliciviridae Infections; Disease Outbreaks; Gastroenteritis; Genotype; Humans; Ireland; Norovirus; Nucleic Acid Hybridization; Reverse Transcriptase Polymerase Chain Reaction; Sensitivity and Specificity
ISSN:
1743-422X

Full metadata record

DC FieldValue Language
dc.contributor.authorMenton, John Fen
dc.contributor.authorKearney, Karenen
dc.contributor.authorMorgan, John Gen
dc.date.accessioned2010-04-06T10:17:17Z-
dc.date.available2010-04-06T10:17:17Z-
dc.date.issued2007-
dc.identifier.citationDevelopment of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland. 2007, 4:86 Virol. J.en
dc.identifier.issn1743-422X-
dc.identifier.pmid17822552-
dc.identifier.doi10.1186/1743-422X-4-86-
dc.identifier.urihttp://hdl.handle.net/10147/95628-
dc.description.abstractBACKGROUND: Noroviruses are the most common cause of non-bacterial gastroenteritis. Improved detection methods have seen a large increase in the number of human NoV genotypes in the last ten years. The objective of this study was to develop a fast method to detect, quantify and genotype positive NoV samples from Irish hospitals. RESULTS: A real-time RT-PCR assay and a Reverse Line Blot Hybridisation assay were developed based on the ORF1-ORF2 region. The sensitivity and reactivity of the two assays used was validated using a reference stool panel containing 14 NoV genotypes. The assays were then used to investigate two outbreaks of gastroenteritis in two Irish hospitals. 56 samples were screened for NoV using a real-time RT-PCR assay and 26 samples were found to be positive. Genotyping of these positive samples found that all positives belonged to the GII/4 variant of NoV. CONCLUSION: The combination of the Real-time assay and the reverse line blot hybridisation assay provided a fast and accurate method to investigate a NoV associated outbreak. It was concluded that the predominant genotype circulating in these Irish hospitals was GII/4 which has been associated with the majority of NoV outbreaks worldwide. The assays developed in this study are useful tools for investigating NoV infection.-
dc.language.isoenen
dc.subject.meshCaliciviridae Infections-
dc.subject.meshDisease Outbreaks-
dc.subject.meshGastroenteritis-
dc.subject.meshGenotype-
dc.subject.meshHumans-
dc.subject.meshIreland-
dc.subject.meshNorovirus-
dc.subject.meshNucleic Acid Hybridization-
dc.subject.meshReverse Transcriptase Polymerase Chain Reaction-
dc.subject.meshSensitivity and Specificity-
dc.titleDevelopment of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland.en
dc.contributor.departmentLab 439, Food Science Building, Department of Microbiology, University College Cork, Cork, Republic of Ireland. j.menton@ucc.ieen
dc.identifier.journalVirology journalen

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